PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098931.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 375aa MW: 42487.2 Da PI: 9.6692

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+++++ +G g+W+t + g++R++k+c++rw +yl XP_028098931.1 13 KGAWTKQEDQKLIHYIHTHGEGSWRTLPMAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	50.3	5.6e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ XP_028098931.1 66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89999***************.*****.*********987 PP
3	Myb_DNA-binding	27	1e-08	227	250	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ XP_028098931.1 227 RWSLIAGRLP-GRTDNEVKNYWNSH 250 6*******.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MRKPCCDKKE THKGAWTKQE DQKLIHYIHT HGEGSWRTLP MAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKRKLIRIGI 120 DPNNHRLNQT LPRPQNQSMS NLTTSSESTN DASKPLKAFT GNDGVSVNAT CLEDDNSSSN 180 ELNLNLDLTI AIPCAFSLFE GKKGQEKELK VAKESESDQL PTLLLFRWSL IAGRLPGRTD 240 NEVKNYWNSH IKRKLIRIGI DPNNHRLNQT LPRPQNQYMS NLTTSSESTN DASKPLKAFT 300 DNDRVSLNAT CPEDDNSSSN ELNLNLDLTI AVPCAFSLFE GKKGQEKELK VAKKSESDHL 360 PTLLLFRSRI KLVSK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MRKPCCDKKE THKGAWTKQE DQKLIHYIHT HGEGSWRTLP MAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IKRKLIRIGI  120
DPNNHRLNQT LPRPQNQSMS NLTTSSESTN DASKPLKAFT GNDGVSVNAT CLEDDNSSSN  180
ELNLNLDLTI AIPCAFSLFE GKKGQEKELK VAKESESDQL PTLLLFRWSL IAGRLPGRTD  240
NEVKNYWNSH IKRKLIRIGI DPNNHRLNQT LPRPQNQYMS NLTTSSESTN DASKPLKAFT  300
DNDRVSLNAT CPEDDNSSSN ELNLNLDLTI AVPCAFSLFE GKKGQEKELK VAKKSESDHL  360
PTLLLFRSRI KLVSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-71	MYB family protein