PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028098985.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29153.8 Da    PI: 7.2485
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028098985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18111165256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Lee F+ +++++ ++++eLA+kl+L  rqV vWFqNrRa+ k
  XP_028098985.1 111 RKKLRLNKDQSALLEESFKIHSTLNPKQKQELARKLNLRPRQVEVWFQNRRARTK 165
                     778899***********************************************98 PP
2HD-ZIP_I/II122.81.6e-39111200191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q++lLEesF+ +++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l
  XP_028098985.1 111 RKKLRLNKDQSALLEESFKIHSTLNPKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-TL 200
                     69*************************************************************************************9.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGFDDLCNTG LVLGLGFSSA ADNISTADNL RPNYKPKVTR AFEPSLTLGL CGSDEIENHE  60
LLYRQDSAAS SFSNASVKRE REIGSEEAEI EMTERVSSRV SDEDDDGTNA RKKLRLNKDQ  120
SALLEESFKI HSTLNPKQKQ ELARKLNLRP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC  180
ETLTDENRRL QKELQDLKTL KLTQPFYMQL PAATLTMCPS CERIGGGGGG NGGGDNTPKN  240
PFSMAPKPHF FNPFTNPSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.19e-93HD-ZIP family protein