PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028099147.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15641.8 Da    PI: 6.5225
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028099147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131159149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    kr+e + +r vtfskRr+g++  A  L  L++a++a++ifs+tg+ y+ 
  XP_028099147.1 11 KRVEKEGQRMVTFSKRRHGLFNIARQLRSLTGANIAILIFSPTGRPYTH 59
                    6889999*************************************98885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MGSGKEKIEI KRVEKEGQRM VTFSKRRHGL FNIARQLRSL TGANIAILIF SPTGRPYTHG  60
KPSFDALVDR YLNTTAAAGE KAEEGCEAAA ANHHRLSSWL DALQFDASDS IEDLEILRKG  120
LEEIAAKVAE KIDDGFVDSL LV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-16M-type_MADS family protein