PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028100189.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 212aa    MW: 22789.8 Da    PI: 4.6655
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028100189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.22.9e-43571561100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p +f ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+aela
  XP_028100189.1  57 PCAACKILRRRCAEKCVLAPYFPPTDPLRFTIAHRVFGASNIIKLLQELPESQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQVSELQAELA 151
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_028100189.1 152 KTQAE 156
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MECSDRTTTI TVSTSSFFTP SSSPPRSTSS SPTQSSGGGG GGAPPSPPPP AVVVMSPCAA  60
CKILRRRCAE KCVLAPYFPP TDPLRFTIAH RVFGASNIIK LLQELPESQR ADAVSSMVYE  120
ANARIRDPVY GCAGAIFQLQ KQVSELQAEL AKTQAEVVNM QCQQANLVAL LCMEMSQSEE  180
PIFQHEQALY DDNASLSLDD GSFAPAWETL WA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-72LBD family protein