PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100291.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28558.5 Da PI: 8.6104

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83	1.9e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskR++g+lKKA+ELS+LCdaev +iif ++gklye++s XP_028100291.1 9 KKIENVNSRQVTFSKRKAGLLKKAKELSILCDAEVGLIIFNNSGKLYEFAS 59 68***********************************************86 PP
2	K-box	72.9	9e-25	85	176	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ e+ +el+ L+ e+ +Lq+ R+ +G+dLe +s+keLqqLe+qL++++ ++++K+++lleq+e+++ +e++++ en++Lr+++ee XP_028100291.1 85 KAVSELEKQPHELDALRGEVAKLQKGYRRTMGKDLEGMSFKELQQLEHQLNEGILFVKDRKEQVLLEQLEKSKLQEQKVKLENETLREQIEE 176 5567788999*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGKIEIKK IENVNSRQVT FSKRKAGLLK KAKELSILCD AEVGLIIFNN SGKLYEFASP 60 RMEHILARYN NGLESSTLTN PSTEKAVSEL EKQPHELDAL RGEVAKLQKG YRRTMGKDLE 120 GMSFKELQQL EHQLNEGILF VKDRKEQVLL EQLEKSKLQE QKVKLENETL REQIEELGRR 180 STTPTPTHEF HCLGRKRSVL SSNTVCDGYF DTERDSETSL RLGLSSEVFH KRKVCKIESV 240 SNDDSGSQMA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	1e-53	MIKC_MADS family protein