PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100442.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 26834.2 Da PI: 7.1386

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.1	1.9e-22	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks+ qvtfskRr+gi+KKA EL vLC+a vavi+ s+ gk++ + XP_028100442.1 9 KKIEKKSQLQVTFSKRRAGIFKKAGELGVLCGAHVAVIVTSPAGKVFAF 57 68********************************************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRQKIEIKK IEKKSQLQVT FSKRRAGIFK KAGELGVLCG AHVAVIVTSP AGKVFAFGNP 60 SVDSVIDRFL SENPNPNPNS HGFDACHDDE LHQVHQQSIN PNPNSQCSER HRVSKNPNPN 120 PNPNSQCLDM CQEEVRQVQQ LSKKYVKAVG KLEAEKERGK AVAELNSGRG GGGFWWDESV 180 DGLELHELEQ YVAALEVLKS NLLARADEMA VAASGFPANF LASNGVVVAN AFGSAECSGF 240 GFDCKPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-32	M-type_MADS family protein