PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100486.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 280aa MW: 32140.4 Da PI: 4.5237

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.2	1.1e-19	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G g W+++a++ g++Rt+k+c++rw++yl XP_028100486.1 6 KGPWTEEEDSKLINYITIYGEGPWNSVAQCAGLNRTGKSCRLRWLNYL 53 79********************************************97 PP
2	Myb_DNA-binding	43	1e-13	59	102	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ XP_028100486.1 59 RGNLTLQEQFLILHLHLRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 102 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MEFIRKGPWT EEEDSKLINY ITIYGEGPWN SVAQCAGLNR TGKSCRLRWL NYLRPDVRRG 60 NLTLQEQFLI LHLHLRWGNR WSKIAQQLPG RTDNEIKNYW RTRIQKQAKQ LNCDVNSNEF 120 RDTIRNFLLP RLVDQIQAES DALSSMAEPT SIHDSSATET WMIASSSQQQ FLEKQSVFTD 180 FDSDHALANI WLNISSLTDW GGCFGATGLT SDRNNACCEQ DMFDDAEEEE EEETMEYRKA 240 SRLAGGGGGG WGSVDTMLYY DGGEEGYTNN TSFDYHYTFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47190.1	9e-75	MYB family protein