PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100904.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 25835.5 Da PI: 7.9337

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.8	2.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeEL vLCda+va+iifs tgkl++y+s XP_028100904.1 9 KKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFDYAS 59 68***********************************************86 PP
2	K-box	53.1	1.3e-18	89	171	16	98
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++a+L ke+++ +++R++ G+dL+ L+++eLqqLe+ Le++l+++ ++K e ++++i +lq k +l eenk+L++k+ XP_028100904.1 89 ENTNNHARLSKEVSEKTNQLRQMRGDDLQGLNIEELQQLERMLESGLSRVLKTKGERIMNEIATLQSKGAQLIEENKQLKQKM 171 4568899**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELAVLCD ADVALIIFSA TGKLFDYASS 60 SMKDILRKYN VHANNSEKMD QPSLELQLEN TNNHARLSKE VSEKTNQLRQ MRGDDLQGLN 120 IEELQQLERM LESGLSRVLK TKGERIMNEI ATLQSKGAQL IEENKQLKQK MTMISKGKWG 180 VGVANVGAES DNLVPEEGQS PESITNGCSC NSAPPPEDDC SDTSLKLGLP IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-101	MIKC_MADS family protein