PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101125.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 456aa MW: 49727.7 Da PI: 6.2998

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	390	435	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_028101125.1 390 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 435 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MDSDFGFRGE ECSDDSQQVQ QQQPIRNSGL VRYRSAPSSY FARLVNTGGG GGGENCDQFV 60 NPRPSSPETD QIFAGFMSCG GTQDSTPHNL CDIGQNSSAN EAFQPQFVAN LKEETDIFHH 120 HHHDEQQHNS GYSSASVSAS ASASQIIYQN QSQDTQPNHN SVASNSGMDN SCGVANSMRT 180 KLSGGAGSSN SNLIRHSSSP AGLFSHINNE NAEIIQLLAG YDVMRGMGNF GGGNGTNAEA 240 WLPSPSRLKR QMAFSSGPPS CSGPMAPISE NGSKCMEISG PEHESFCEDH RNDRGYIAGF 300 PIGSWDDSAI LSNSFLKRLE DDDRETFSDM NVSENQKVGG GNRAPTVLSH HLSLPTSSAE 360 LSAMEKLLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT 420 ADMLDLAVDY IKDLQKQVKI LSDSRVKCRC SNEHRP

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MDSDFGFRGE ECSDDSQQVQ QQQPIRNSGL VRYRSAPSSY FARLVNTGGG GGGENCDQFV  60
NPRPSSPETD QIFAGFMSCG GTQDSTPHNL CDIGQNSSAN EAFQPQFVAN LKEETDIFHH  120
HHHDEQQHNS GYSSASVSAS ASASQIIYQN QSQDTQPNHN SVASNSGMDN SCGVANSMRT  180
KLSGGAGSSN SNLIRHSSSP AGLFSHINNE NAEIIQLLAG YDVMRGMGNF GGGNGTNAEA  240
WLPSPSRLKR QMAFSSGPPS CSGPMAPISE NGSKCMEISG PEHESFCEDH RNDRGYIAGF  300
PIGSWDDSAI LSNSFLKRLE DDDRETFSDM NVSENQKVGG GNRAPTVLSH HLSLPTSSAE  360
LSAMEKLLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT  420
ADMLDLAVDY IKDLQKQVKI LSDSRVKCRC SNEHRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-59	bHLH family protein