PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101157.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 409aa MW: 45640.2 Da PI: 7.5654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_028101157.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.7	6.4e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ XP_028101157.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGRHSCCFKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLKQKG 120 IDPNTHKPLS NAESEEKASG GSKSNELTNV EAENSDKGMA IHKSKRASVA TENYFENNCN 180 NNMTTPPSTT HEFFLDRFVS SHESSTAACK TSDFPAYFPF QQLNYGSDAR LSVNTNTPNN 240 LFLNPNTTTL FSSMSSPTIK PSISLPSSTP SMGSFDINGV HNWNTASFSN NGSSSSNGST 300 NSSSFFDNNG TFSWGPENCI KSEKEGEIHA IEGDPEEIKW SEYLQTPYLF GTTIQNQTAH 360 QDIYSTETKT ESHFNAQGSS TNWQQQSSQS ADLYNKNFQR IAAAYGQFS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGRHSCCFKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLKQKG  120
IDPNTHKPLS NAESEEKASG GSKSNELTNV EAENSDKGMA IHKSKRASVA TENYFENNCN  180
NNMTTPPSTT HEFFLDRFVS SHESSTAACK TSDFPAYFPF QQLNYGSDAR LSVNTNTPNN  240
LFLNPNTTTL FSSMSSPTIK PSISLPSSTP SMGSFDINGV HNWNTASFSN NGSSSSNGST  300
NSSSFFDNNG TFSWGPENCI KSEKEGEIHA IEGDPEEIKW SEYLQTPYLF GTTIQNQTAH  360
QDIYSTETKT ESHFNAQGSS TNWQQQSSQS ADLYNKNFQR IAAAYGQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	2e-99	MYB family protein