PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101419.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 453aa MW: 49939.8 Da PI: 9.1462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.5e-11	61	86	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G+ C+F+H+p XP_028101419.1 61 GEPDCSYYIRTGLCRFGAACRFNHPP 86 6899********************97 PP
2	zf-CCCH	33.7	6e-11	107	131	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101419.1 107 QPECQYYLKTATCKFGATCKFHHPR 131 799********************96 PP
3	zf-CCCH	36.5	8e-12	153	177	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101419.1 153 ETECAYYLRTGQCKFGSTCKFHHPQ 177 578********************97 PP
4	zf-CCCH	37.7	3.4e-12	313	339	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101419.1 313 PGQPDCQFYMKTGDCKFGAVCRFHHPR 339 5789*********************96 PP
5	zf-CCCH	35.9	1.3e-11	360	385	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101419.1 360 GEPSCIFYSRYGICKFGPSCKFDHPM 385 7889********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MEVSLSWNST PEFRCPKPLS PTLLLPCLRL WMKVRFKYTL WQMNLRSSEI MESGPYPMRE 60 GEPDCSYYIR TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK 120 FGATCKFHHP RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN 180 MMVSLRGSPV YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV 240 MSVPGYTYSG HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY 300 YALQRENVFP ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG 360 EPSCIFYSRY GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS 420 EGLVDAGSAK PRRLSLSESR QMPSGDDNID TEG

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MEVSLSWNST PEFRCPKPLS PTLLLPCLRL WMKVRFKYTL WQMNLRSSEI MESGPYPMRE  60
GEPDCSYYIR TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK  120
FGATCKFHHP RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN  180
MMVSLRGSPV YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV  240
MSVPGYTYSG HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY  300
YALQRENVFP ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG  360
EPSCIFYSRY GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS  420
EGLVDAGSAK PRRLSLSESR QMPSGDDNID TEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-167	C3H family protein