PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101420.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 443aa MW: 48263.4 Da PI: 8.4195

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.4e-11	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G+ C+F+H+p XP_028101420.1 51 GEPDCSYYIRTGLCRFGAACRFNHPP 76 6899********************97 PP
2	zf-CCCH	33.8	5.8e-11	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101420.1 97 QPECQYYLKTATCKFGATCKFHHPR 121 799********************96 PP
3	zf-CCCH	36.6	7.8e-12	143	167	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101420.1 143 ETECAYYLRTGQCKFGSTCKFHHPQ 167 578********************97 PP
4	zf-CCCH	37.7	3.3e-12	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101420.1 303 PGQPDCQFYMKTGDCKFGAVCRFHHPR 329 5789*********************96 PP
5	zf-CCCH	35.9	1.3e-11	350	375	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101420.1 350 GEPSCIFYSRYGICKFGPSCKFDHPM 375 7889********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MEFDAGIPMS QAAVTDAPSS LSPPLDEDTL WQMNLRSSEI MESGPYPMRE GEPDCSYYIR 60 TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK FGATCKFHHP 120 RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN MMVSLRGSPV 180 YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV MSVPGYTYSG 240 HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY YALQRENVFP 300 ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG EPSCIFYSRY 360 GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS EGLVDAGSAK 420 PRRLSLSESR QMPSGDDNID TEG

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MEFDAGIPMS QAAVTDAPSS LSPPLDEDTL WQMNLRSSEI MESGPYPMRE GEPDCSYYIR  60
TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK FGATCKFHHP  120
RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN MMVSLRGSPV  180
YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV MSVPGYTYSG  240
HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY YALQRENVFP  300
ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG EPSCIFYSRY  360
GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS EGLVDAGSAK  420
PRRLSLSESR QMPSGDDNID TEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-176	C3H family protein