PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101423.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 357aa MW: 38726.6 Da PI: 8.8847

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.5e-11	11	35	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101423.1 11 QPECQYYLKTATCKFGATCKFHHPR 35 799********************96 PP
2	zf-CCCH	36.9	6e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101423.1 57 ETECAYYLRTGQCKFGSTCKFHHPQ 81 578********************97 PP
3	zf-CCCH	38.1	2.6e-12	217	243	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101423.1 217 PGQPDCQFYMKTGDCKFGAVCRFHHPR 243 5789*********************96 PP
4	zf-CCCH	36.3	9.6e-12	264	289	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101423.1 264 GEPSCIFYSRYGICKFGPSCKFDHPM 289 7889********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MKGEFPERIG QPECQYYLKT ATCKFGATCK FHHPRDKAGI AGRVTLNILG YPHRPNETEC 60 AYYLRTGQCK FGSTCKFHHP QPSNMMVSLR GSPVYPTVHS PTTPGQQSYP GGITNWPLSR 120 ASFIPSPRWQ GPSSYAPLIL PQGVMSVPGY TYSGHPSSVS SSESQQQTAG NNQIYGTSRQ 180 SEAANSGSQG TLSPYRSGSV PVGYYALQRE NVFPERPGQP DCQFYMKTGD CKFGAVCRFH 240 HPRERLLPAP DCILSPIGLP LRPGEPSCIF YSRYGICKFG PSCKFDHPMG VFTYNLAASS 300 SPHAPVVRRL LGSSSGAGAL ALSSEGLVDA GSAKPRRLSL SESRQMPSGD DNIDTEG

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MKGEFPERIG QPECQYYLKT ATCKFGATCK FHHPRDKAGI AGRVTLNILG YPHRPNETEC  60
AYYLRTGQCK FGSTCKFHHP QPSNMMVSLR GSPVYPTVHS PTTPGQQSYP GGITNWPLSR  120
ASFIPSPRWQ GPSSYAPLIL PQGVMSVPGY TYSGHPSSVS SSESQQQTAG NNQIYGTSRQ  180
SEAANSGSQG TLSPYRSGSV PVGYYALQRE NVFPERPGQP DCQFYMKTGD CKFGAVCRFH  240
HPRERLLPAP DCILSPIGLP LRPGEPSCIF YSRYGICKFG PSCKFDHPMG VFTYNLAASS  300
SPHAPVVRRL LGSSSGAGAL ALSSEGLVDA GSAKPRRLSL SESRQMPSGD DNIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-133	C3H family protein