PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101424.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 750aa MW: 83718.8 Da PI: 4.7407

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101424.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.6	1.2e-12	595	638	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ + I + ++ gRt++q+k+++ k XP_028101424.1 595 RSRWSKQDTELFYEAVRQFGTD-ISMIQQLFP-GRTRNQVKLKYKK 638 78******************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MGTDLDPLDE IFPERIANKA RAGGKFQPKA KASSRKEPSA PIPSTQSVQV VDIAENELTA 60 LVGPSLVSSE TVNTKKPLEN SEDSVSGVHS SDKSVSVSPS LEHFVIEETL GHNVGLHSDI 120 TIPDINGDWN STTGKSAGES ADIFFGLESF DDVNSQPTTA TVSAASRPSD NVDPSIQLRN 180 EFIIACPGNN DSEGSLASPE IPTVHVSDTR SAEKGALILD NRRLEIEEAE AVPCLETLDN 240 LYKLTPRPEQ RSCKFQPKPK IKIGREKPGT GISHANGVES VPCFQDALSI PSNGEYILRP 300 NDILDFSSSR FGDSISELPV NEEPTNHAKT SHPDKFIPGK HPEVVPRSLE KVSQNRRKKK 360 TPTVLDDSLE HHNSSISGQE NEAGRSMRQL RKRTNACRLV DESEDEASDD ENYTNECSSD 420 SLIDENDNDD GINQDAKKTR NTRVPRKSNK SASQKEKPVR KHKKVKEVPD QTTREPPKKF 480 SHSTRRKRRQ VDKVLLEIPE EEIDFQSLSI REIILLAEYR ERMSSKEGKT SEPPSTNQRY 540 GSSPNSFGNP FTNYNEDENF ESEQGGGSSN DPANPVVQES SNYPNYQSYM KKTPRSRWSK 600 QDTELFYEAV RQFGTDISMI QQLFPGRTRN QVKLKYKKEE CQQPLRLQEA LTNRAEDHSH 660 YQLVIERLQQ LAAEEKQNSY GDDSIGLTGN EEEANPEING AQEEEVAKPE QGEEGEVQSM 720 EPEVSQVQSP VNSYDSEDEL CRWSQYKSEF

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MGTDLDPLDE IFPERIANKA RAGGKFQPKA KASSRKEPSA PIPSTQSVQV VDIAENELTA  60
LVGPSLVSSE TVNTKKPLEN SEDSVSGVHS SDKSVSVSPS LEHFVIEETL GHNVGLHSDI  120
TIPDINGDWN STTGKSAGES ADIFFGLESF DDVNSQPTTA TVSAASRPSD NVDPSIQLRN  180
EFIIACPGNN DSEGSLASPE IPTVHVSDTR SAEKGALILD NRRLEIEEAE AVPCLETLDN  240
LYKLTPRPEQ RSCKFQPKPK IKIGREKPGT GISHANGVES VPCFQDALSI PSNGEYILRP  300
NDILDFSSSR FGDSISELPV NEEPTNHAKT SHPDKFIPGK HPEVVPRSLE KVSQNRRKKK  360
TPTVLDDSLE HHNSSISGQE NEAGRSMRQL RKRTNACRLV DESEDEASDD ENYTNECSSD  420
SLIDENDNDD GINQDAKKTR NTRVPRKSNK SASQKEKPVR KHKKVKEVPD QTTREPPKKF  480
SHSTRRKRRQ VDKVLLEIPE EEIDFQSLSI REIILLAEYR ERMSSKEGKT SEPPSTNQRY  540
GSSPNSFGNP FTNYNEDENF ESEQGGGSSN DPANPVVQES SNYPNYQSYM KKTPRSRWSK  600
QDTELFYEAV RQFGTDISMI QQLFPGRTRN QVKLKYKKEE CQQPLRLQEA LTNRAEDHSH  660
YQLVIERLQQ LAAEEKQNSY GDDSIGLTGN EEEANPEING AQEEEVAKPE QGEEGEVQSM  720
EPEVSQVQSP VNSYDSEDEL CRWSQYKSEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-43	MYB_related family protein