PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028101837.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 96aa    MW: 11341.5 Da    PI: 11.1159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028101837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.5e-21953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++sn+qvt+ +RrngilKKA+ELS+L d+++ +++fs+tgk
  XP_028101837.1  9 KRLESTSNQQVTYLRRRNGILKKAKELSILYDIDIVLLMFSPTGK 53
                    789*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    
MERVKLKIKR LESTSNQQVT YLRRRNGILK KAKELSILYD IDIVLLMFSP TGKATLFRRE  60
RSNIEEVITK FAQLTPQERT KRKLESLEVR LILPVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.14e-44M-type_MADS family protein