PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028102409.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 481aa MW: 50975.2 Da PI: 7.9234

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028102409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38	2.7e-12	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_028102409.1 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69 6799********************96 PP
2	zf-CCCH	38.5	2e-12	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_028102409.1 91 EPVCQYYMRTGMCKFGASCKYHHPQ 115 789********************97 PP
3	zf-CCCH	32.7	1.3e-10	136	160	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ XP_028102409.1 136 GEKECSYYVKTGQCKFGVTCKFHHP 160 7899********************8 PP
4	zf-CCCH	34	5e-11	303	328	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +tG Ck+G++C+++H+ XP_028102409.1 303 PGQPECQYYIKTGNCKFGSSCRYHHP 328 5789*********************9 PP
5	zf-CCCH	35	2.3e-11	352	374	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC ++a++G Ck+G++CkF H+ XP_028102409.1 352 QLCTHYAQNGVCKFGSSCKFDHP 374 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MERYGRATAM EGSQSDPGGE TGLEEPMWQL GFGSGVESYP ERPDEADCIY YLRTGFCGYG 60 SRCRFNHPRD RGSVVGVMRA GGGEFPERVG EPVCQYYMRT GMCKFGASCK YHHPQQGGGS 120 AIPMTLNIYG YPFRPGEKEC SYYVKTGQCK FGVTCKFHHP HPAGIQMPAP NAGPLPMPAP 180 VPAAIYPSIQ SPSAPSSQQY GVVAGNWPVA RPTLVQGSYL QGAYSPVLLS TGMVPFSGWN 240 PYQASVNPVA SPSSQSTIGA SPIYGLTQLS PSAPAYAGAY LPLHASAGPS SSNQREYAFP 300 ERPGQPECQY YIKTGNCKFG SSCRYHHPLE WSLPQMNFVL SPMGLPLRPG AQLCTHYAQN 360 GVCKFGSSCK FDHPLGTLSY SSSASSLADM PVAPYPVGSS MGTLAPSSSS ELRHELILGS 420 NKDAISTRMS SSTSTSSGSV GLILSKSGPA SHPSVQQSDQ ASASSITSSS VSQGGEVHTS 480 I

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MERYGRATAM EGSQSDPGGE TGLEEPMWQL GFGSGVESYP ERPDEADCIY YLRTGFCGYG  60
SRCRFNHPRD RGSVVGVMRA GGGEFPERVG EPVCQYYMRT GMCKFGASCK YHHPQQGGGS  120
AIPMTLNIYG YPFRPGEKEC SYYVKTGQCK FGVTCKFHHP HPAGIQMPAP NAGPLPMPAP  180
VPAAIYPSIQ SPSAPSSQQY GVVAGNWPVA RPTLVQGSYL QGAYSPVLLS TGMVPFSGWN  240
PYQASVNPVA SPSSQSTIGA SPIYGLTQLS PSAPAYAGAY LPLHASAGPS SSNQREYAFP  300
ERPGQPECQY YIKTGNCKFG SSCRYHHPLE WSLPQMNFVL SPMGLPLRPG AQLCTHYAQN  360
GVCKFGSSCK FDHPLGTLSY SSSASSLADM PVAPYPVGSS MGTLAPSSSS ELRHELILGS  420
NKDAISTRMS SSTSTSSGSV GLILSKSGPA SHPSVQQSDQ ASASSITSSS VSQGGEVHTS  480
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-153	C3H family protein