PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028102410.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 441aa MW: 46462.9 Da PI: 7.2616

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028102410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_028102410.1 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69 6799********************96 PP
2	zf-CCCH	32.5	1.5e-10	96	120	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ XP_028102410.1 96 GEKECSYYVKTGQCKFGVTCKFHHP 120 6789********************8 PP
3	zf-CCCH	34.1	4.5e-11	263	288	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +tG Ck+G++C+++H+ XP_028102410.1 263 PGQPECQYYIKTGNCKFGSSCRYHHP 288 5789*********************9 PP
4	zf-CCCH	35.2	2.1e-11	312	334	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC ++a++G Ck+G++CkF H+ XP_028102410.1 312 QLCTHYAQNGVCKFGSSCKFDHP 334 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MERYGRATAM EGSQSDPGGE TGLEEPMWQL GFGSGVESYP ERPDEADCIY YLRTGFCGYG 60 SRCRFNHPRD RGSVVGVMRA GGGEFPERVG EPVCQGEKEC SYYVKTGQCK FGVTCKFHHP 120 HPAGIQMPAP NAGPLPMPAP VPAAIYPSIQ SPSAPSSQQY GVVAGNWPVA RPTLVQGSYL 180 QGAYSPVLLS TGMVPFSGWN PYQASVNPVA SPSSQSTIGA SPIYGLTQLS PSAPAYAGAY 240 LPLHASAGPS SSNQREYAFP ERPGQPECQY YIKTGNCKFG SSCRYHHPLE WSLPQMNFVL 300 SPMGLPLRPG AQLCTHYAQN GVCKFGSSCK FDHPLGTLSY SSSASSLADM PVAPYPVGSS 360 MGTLAPSSSS ELRHELILGS NKDAISTRMS SSTSTSSGSV GLILSKSGPA SHPSVQQSDQ 420 ASASSITSSS VSQGGEVHTS I

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MERYGRATAM EGSQSDPGGE TGLEEPMWQL GFGSGVESYP ERPDEADCIY YLRTGFCGYG  60
SRCRFNHPRD RGSVVGVMRA GGGEFPERVG EPVCQGEKEC SYYVKTGQCK FGVTCKFHHP  120
HPAGIQMPAP NAGPLPMPAP VPAAIYPSIQ SPSAPSSQQY GVVAGNWPVA RPTLVQGSYL  180
QGAYSPVLLS TGMVPFSGWN PYQASVNPVA SPSSQSTIGA SPIYGLTQLS PSAPAYAGAY  240
LPLHASAGPS SSNQREYAFP ERPGQPECQY YIKTGNCKFG SSCRYHHPLE WSLPQMNFVL  300
SPMGLPLRPG AQLCTHYAQN GVCKFGSSCK FDHPLGTLSY SSSASSLADM PVAPYPVGSS  360
MGTLAPSSSS ELRHELILGS NKDAISTRMS SSTSTSSGSV GLILSKSGPA SHPSVQQSDQ  420
ASASSITSSS VSQGGEVHTS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-124	C3H family protein