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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_028102580.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 229aa MW: 25772.2 Da PI: 8.5112 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 48.1 | 2e-15 | 50 | 103 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe + + e++ +LA+ gL+ rq+ +WFqNrRa++k
XP_028102580.1 50 KKRRLNLEQVKTLEKNFELGNMLESERKMQLARAPGLQPRQIAMWFQNRRARWK 103
4557899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 117.5 | 7.7e-38 | 49 | 139 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrl+ eqvk+LE++Fe + Le+erK++lar+ glqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d +k++n++L++++++ ++e+
XP_028102580.1 49 EKKRRLNLEQVKTLEKNFELGNMLESERKMQLARAPGLQPRQIAMWFQNRRARWKTKQLEKDYDVLKRQFDVIKADNDALQSQNQKFQAEV 139
69************************************************************************************99987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 229 aa Download sequence |
MPAIFTGMLG GVASLLGKRS MSFLAIEVCD HETNGVEDDL SDDGSQAGEK KRRLNLEQVK 60 TLEKNFELGN MLESERKMQL ARAPGLQPRQ IAMWFQNRRA RWKTKQLEKD YDVLKRQFDV 120 IKADNDALQS QNQKFQAEVL ALKNREPTES INLNKETEGS SSNRSENSSE INLDISTRTP 180 PAMDSPLSNH HHGHPIIPTS SSRPLFPPSI ITRPTSAVVA HLFFFIKTT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 98 | 106 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 2e-80 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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