PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028102693.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24307.9 Da    PI: 10.0483
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028102693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.4e-211561248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    r + +snr vtfskRr g++KKA+EL++LC+ae a+i+fs+  k + 
  XP_028102693.1 15 RMSKESNRLVTFSKRRSGLFKKASELCTLCGAELAIIVFSPAKKAFS 61
                    56889***********************************9988665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MARKSKGRQK IEITRMSKES NRLVTFSKRR SGLFKKASEL CTLCGAELAI IVFSPAKKAF  60
SFGHPCVDTI VDRFLSRNTQ PNSGSLQLVE AHRNANVREL NLHLTEALDT LEAEKKKGEE  120
LNKMRKDSRD KCWWEAPVSE LGLQQLEQLK VAMEDLKKNV VKQGEKIQME ESNPSRFFAA  180
GSSSMGGHVG GGPHDVKVSG LGLSMTPHGY TLGYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-63M-type_MADS family protein