PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028102729.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family YABBY
Protein Properties Length: 186aa    MW: 20822.7 Da    PI: 8.7704
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028102729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY198.13.7e-6171585170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                       +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++           + + + + +++   +++ +++++v+  
  XP_028102729.1   7 VVPEQLCYIPCNFCNIVLAVSVPCNSLFDMVTVRCGHCSNLWSVNMAAAFQSLSWQDTQ---------ASNTSPDYKIDFGSTSKCNNKATVRPP 92 
                     679************************************************99999962.........222222233333333333333333333 PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +    +  v r   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_028102729.1  93 PIA---NTAVER--AVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158
                     332...333444..589****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSSCVDVVPE QLCYIPCNFC NIVLAVSVPC NSLFDMVTVR CGHCSNLWSV NMAAAFQSLS  60
WQDTQASNTS PDYKIDFGST SKCNNKATVR PPPIANTAVE RAVNRPPEKR QRVPSAYNQF  120
IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ESNNNQTKLD QGSGKHLMPR  180
TSVLRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.18e-82YABBY family protein