PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028102803.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family Whirly
Protein Properties Length: 238aa    MW: 26600.4 Da    PI: 10.243
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028102803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.61.2e-59621981139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaa++  +v+ptf++l sg+lk++r+G+++l++ +a++erkydWek+q falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+l+
  XP_028102803.1  62 SIYKGKAAFSATPVLPTFSKLGSGSLKVDRRGSIMLKFWPAIGERKYDWEKRQLFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKTLS 156
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     v+P     G+f++lsv n+++k+n++fsvPv+ aefav+r++++
  XP_028102803.1 157 VKPND--NGYFISLSVVNNILKTNDRFSVPVTTAEFAVMRTAFS 198
                     **976..58********************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MSKLSSSLFH FRNQLSQRNL SAKDVRDALP LQGFMSRAFI STARETFSAD GKFADRIIAP  60
YSIYKGKAAF SATPVLPTFS KLGSGSLKVD RRGSIMLKFW PAIGERKYDW EKRQLFALSA  120
TEVGSLISLG SKDSCEFFHD PSMLSSNAGQ VRKTLSVKPN DNGYFISLSV VNNILKTNDR  180
FSVPVTTAEF AVMRTAFSFA LPHLMGWDRY THQLPQSMYE NPSSAKVVSP LLDSEWDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-89Whirly family protein