PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028103605.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 28360.8 Da PI: 7.6279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028103605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.9e-20	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq ++Lee F+ n+ ++ +++e+LA++l+L+ rqV vWFqNrRa+ k XP_028103605.1 90 RKKLRLTTEQSRILEETFRFNHSLNPKQKEDLAMQLKLKARQVEVWFQNRRARSK 144 78889************************************************98 PP
2	HD-ZIP_I/II	111.1	7.3e-36	90	178	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LEe+F+ ++ L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n+rL+keveeLr + XP_028103605.1 90 RKKLRLTTEQSRILEETFRFNHSLNPKQKEDLAMQLKLKARQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLREQNRRLQKEVEELR-A 178 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MSVLPTSSTC LELAMSIPGF VSSQSLPSSG DHTGNGNSMR MMMKDLDINQ VPRDSGGGGG 60 GGEEEWTTTV ASMEDEEEET NNDGASGPPR KKLRLTTEQS RILEETFRFN HSLNPKQKED 120 LAMQLKLKAR QVEVWFQNRR ARSKLKQTEI ECEYLKRWFG SLREQNRRLQ KEVEELRAIK 180 VGRCDEPLHS ASTLTMCPSC EQVAAATSTT MHDIDKGPIR TTASATNQTS LSSKVHTIHN 240 HSRHPSAAFP HKIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-69	HD-ZIP family protein