PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028104497.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 422aa MW: 48968.7 Da PI: 7.9192

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028104497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	6e-09	130	197	2	72
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 fY +YAk+vGF + ++++ ++g+ + Cs+ g+r+++++ + ++ +t++gC+a+ +++ ++ XP_028104497.1 130 FYGKYAKHVGFAIAHRAQHFG-DDGQLLNFAIECSRAGQRRKTSEL--NPLKPCLSTKIGCTARRRLEIND 197 9**********99988776.8999************9988..8999*********98877765 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MNAFFDGYVN PKTTLKQFVE QYDNALRNKV EKEKKADFKS RHKLFDCLTI YGFEWVLDVN 60 SFLQKNVKFP PPPPYQITSS HLSSEFFTQR GEMEVDSNVE GENPLINEGK HVEEPKKGMC 120 FSSREEVYTF YGKYAKHVGF AIAHRAQHFG DDGQLLNFAI ECSRAGQRRK TSELNPLKPC 180 LSTKIGCTAR RRLEINDEAG IGVSKNFHSM VVEAGGYESL TFDERDARNY IERARRNLFW 240 ADARSRATYE AFGDVVSFDT TYLTNKYDMP FAPFVGVNHR GQSILLGCGL LSSEDTNTFV 300 WLFKSWLSCM SNHPPKAIIT DQCRAMQNAI KIVFPQTRHR WCLWHIMKKI PEKLKGYAQY 360 EAIKLAMQNA VYDCLTRAEF ESKWEEMLAT FNLYDNEWLG VLYDERNRWV PVYVKDIFWA 420 GM

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MNAFFDGYVN PKTTLKQFVE QYDNALRNKV EKEKKADFKS RHKLFDCLTI YGFEWVLDVN  60
SFLQKNVKFP PPPPYQITSS HLSSEFFTQR GEMEVDSNVE GENPLINEGK HVEEPKKGMC  120
FSSREEVYTF YGKYAKHVGF AIAHRAQHFG DDGQLLNFAI ECSRAGQRRK TSELNPLKPC  180
LSTKIGCTAR RRLEINDEAG IGVSKNFHSM VVEAGGYESL TFDERDARNY IERARRNLFW  240
ADARSRATYE AFGDVVSFDT TYLTNKYDMP FAPFVGVNHR GQSILLGCGL LSSEDTNTFV  300
WLFKSWLSCM SNHPPKAIIT DQCRAMQNAI KIVFPQTRHR WCLWHIMKKI PEKLKGYAQY  360
EAIKLAMQNA VYDCLTRAEF ESKWEEMLAT FNLYDNEWLG VLYDERNRWV PVYVKDIFWA  420
GM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-62	FAR1 family protein