PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028105045.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 179aa    MW: 20367.9 Da    PI: 8.0449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028105045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17101153254
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     rk+ +++k+q  +Lee F+ +++++ +++  LAk+lg+  rqV vWFqNrRa+
  XP_028105045.1 101 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGVRPRQVEVWFQNRRAR 153
                     788899**********************************************8 PP
2HD-ZIP_I/II81.71.1e-26101155155
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 
                     +kk+rlsk+q+ +LEesF+ +++L+p++K +la++Lg++prqv+vWFqnrRAR  
  XP_028105045.1 101 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGVRPRQVEVWFQNRRARLE 155
                     69***************************************************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
YSKIPPKISQ KKNFPSFDRN SETCRVETRS LLKGIDVNRV PSTIDCEEEA GVSSPNSTIS  60
SISGKRSERE EPNGEDLDLD LDLERASSRG ISDEEDGDTS RKKLRLSKDQ SMILEESFKV  120
HNTLNPKQKL ALAKRLGVRP RQVEVWFQNR RARLELCLFF NGVFDILSRV KVQELQSGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106SRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-46HD-ZIP family protein