PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028105065.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 222aa MW: 25474.1 Da PI: 9.94

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028105065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.4	3.3e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly++ss XP_028105065.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFSS 59 8***********************************************96 PP
2	K-box	90.6	2.8e-30	82	170	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q+e+a L+++++nLq+++R+++Ge+L+ L++keLq+Le+qLe slk +R kK+++l+++i+el +k + +++en +L kk+ XP_028105065.1 82 PCSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLNVKELQNLENQLEMSLKGVRMKKDQILVDEIQELNRKGNLIHQENVELYKKV 170 446789*******************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFSSS 60 SMKTIIERYN KSKVEHNQLA NPCSEVKFWQ REAAMLRQQL QNLQENHRQM MGEELSGLNV 120 KELQNLENQL EMSLKGVRMK KDQILVDEIQ ELNRKGNLIH QENVELYKKV YGTRDVNGAN 180 RNALLSNSLS LGDDSHAPVH LQLCQPQQQN YEPPSRGRLQ LH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-98	MIKC_MADS family protein