PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028105678.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 634aa MW: 74145.2 Da PI: 8.7456

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028105678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	428	467	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WTteE el ++++q+G++ W+ a +g + + ++k+ w+ XP_028105678.1 428 SWTTEELELVRKYHEQHGPK-WRELADALG--KHRFHLKDAWR 467 7***************99.******9..55666766665 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MGKKTKEKQK SEAGASKEVS DYNGAMLNGV EDGFELSKED KRRKKDKKKA EVSIDVELDG 60 THNEDINMKD YAEVDDNYRR EKEKRKKKRR KLEPGEDNDE SNNEIHMGGE ERRCLQIDDD 120 KDLGNDSESK ARKEKKKRHK EDRKKDKKES VSSPMKVCKD KKTEKDEVVK DQKSSRKDNI 180 ADMKNGEEQI EKKKTHKGRK GKEIIDFDGK KRSTAAEDVG KVREYCDVDV SDKVETKKRK 240 REKKKGKDDL GAGMQEMMAE EFGNKRSLTE DKDFGYNNRN HHLARNKMQE IETKNGDKGN 300 RKKPNSFEPG SEDPKPKGKS KKVRFSSNIE VFPSSDGPSK GKEKNEDEKL VQGKWFSPEE 360 DEIIKDAVSN YIRYNDLSED GLAMVLRCGS HPKIRHCWKD ISTVLPHRPL KSVYYRAHIL 420 FERAESRSWT TEELELVRKY HEQHGPKWRE LADALGKHRF HLKDAWRRIK LPNINKGHWS 480 QEEYQNLFDL VNMDLRMKAY EEKKSKHGML RDNISWGAIS DKLLTRSDKV CCEKWYHQLS 540 SSMVAEGNWA DTDDYRLLDT LFSLDACCIE DVDWDYLLDH RSGDLCRKRW NQMINHIGEH 600 KNKSFAEQVE ILTNRYCPDL LEAREAWDNK PFVD

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MGKKTKEKQK SEAGASKEVS DYNGAMLNGV EDGFELSKED KRRKKDKKKA EVSIDVELDG  60
THNEDINMKD YAEVDDNYRR EKEKRKKKRR KLEPGEDNDE SNNEIHMGGE ERRCLQIDDD  120
KDLGNDSESK ARKEKKKRHK EDRKKDKKES VSSPMKVCKD KKTEKDEVVK DQKSSRKDNI  180
ADMKNGEEQI EKKKTHKGRK GKEIIDFDGK KRSTAAEDVG KVREYCDVDV SDKVETKKRK  240
REKKKGKDDL GAGMQEMMAE EFGNKRSLTE DKDFGYNNRN HHLARNKMQE IETKNGDKGN  300
RKKPNSFEPG SEDPKPKGKS KKVRFSSNIE VFPSSDGPSK GKEKNEDEKL VQGKWFSPEE  360
DEIIKDAVSN YIRYNDLSED GLAMVLRCGS HPKIRHCWKD ISTVLPHRPL KSVYYRAHIL  420
FERAESRSWT TEELELVRKY HEQHGPKWRE LADALGKHRF HLKDAWRRIK LPNINKGHWS  480
QEEYQNLFDL VNMDLRMKAY EEKKSKHGML RDNISWGAIS DKLLTRSDKV CCEKWYHQLS  540
SSMVAEGNWA DTDDYRLLDT LFSLDACCIE DVDWDYLLDH RSGDLCRKRW NQMINHIGEH  600
KNKSFAEQVE ILTNRYCPDL LEAREAWDNK PFVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	RRKKDK
2	79	92	RREKEKRKKKRRKL
3	80	89	REKEKRKKKR
4	83	92	EKRKKKRRKL
5	84	90	KRKKKRR
6	85	91	KRKKKRR
7	85	92	RKKKRRKL
8	86	90	KKKRR
9	86	91	KKKRRK
10	87	91	KKRRK
11	130	145	KARKEKKKRHKEDRKK
12	133	145	KEKKKRHKEDRKK
13	135	161	KKKRHKEDRKKDKKESVSSPMKVCKDK
14	192	196	KKKTH
15	237	244	RKKKRRKL
16	240	248	KREKKKGKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-130	MYB_related family protein