PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028106376.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Protein Properties

Length: 554aa MW: 62213.1 Da PI: 8.871

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028106376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.1	2.8e-17	185	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k l++s+v + ++ lp +f++ h +++++t tledesg+++e+k+i +k + l++GW++F+ ++L egD+++F+l+++++f +v XP_028106376.1 185 FTKLLVRSHVASCFWMGLPVPFCKLHL--PRNDTTFTLEDESGEQFELKFIAEKPG----LSAGWRKFAVGHKLLEGDVLIFQLVESNKF--KVY 271 899******************8884..356789***********655555....9********************9987777..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_028106376.1 272 IVRA 275 8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MRSESAKEGL VVVVGSKMKI RLSHKHQSKA IDLHNTTTSN NNHDDDDVDD GAHDHQEVKK 60 EVVSEHSMRS AEDNLTLAQL SNSTSRTLLQ PSTPSPLSTG KRKKKPKELN DDFFYVLVQK 120 KMMMKNKASV SKPNPVVVGH ARKSMSCKRR KTATYGLHSP VQVKTPTMIR AEEVQSSLGS 180 EFPSFTKLLV RSHVASCFWM GLPVPFCKLH LPRNDTTFTL EDESGEQFEL KFIAEKPGLS 240 AGWRKFAVGH KLLEGDVLIF QLVESNKFKV YIVRANDLTE VDGALSLLNL DALTKQNDSG 300 KDDSANGGIA LNNKKRKRTK SLPLALVQKK NKKTTVRKSV PKPIQPVEQF ENDSEDVGSE 360 VLVGPKSSGS ATQFRDIKSF DDFTILFDGF CIDSELPEHT RVNYYELCRS KNTFIHARLI 420 QGLNCKLVAG IICETVNIAN DIRACKLTTS RDEFAIWEKT LKSFELMGMD VGFLRARVCH 480 LLSMAFESEG ALDTRQYMEA ETERDRAEYE IRNLEAKLVE LKAASEKLGV DVKALKSKAE 540 SYEHKFQKEV DAPW

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MRSESAKEGL VVVVGSKMKI RLSHKHQSKA IDLHNTTTSN NNHDDDDVDD GAHDHQEVKK  60
EVVSEHSMRS AEDNLTLAQL SNSTSRTLLQ PSTPSPLSTG KRKKKPKELN DDFFYVLVQK  120
KMMMKNKASV SKPNPVVVGH ARKSMSCKRR KTATYGLHSP VQVKTPTMIR AEEVQSSLGS  180
EFPSFTKLLV RSHVASCFWM GLPVPFCKLH LPRNDTTFTL EDESGEQFEL KFIAEKPGLS  240
AGWRKFAVGH KLLEGDVLIF QLVESNKFKV YIVRANDLTE VDGALSLLNL DALTKQNDSG  300
KDDSANGGIA LNNKKRKRTK SLPLALVQKK NKKTTVRKSV PKPIQPVEQF ENDSEDVGSE  360
VLVGPKSSGS ATQFRDIKSF DDFTILFDGF CIDSELPEHT RVNYYELCRS KNTFIHARLI  420
QGLNCKLVAG IICETVNIAN DIRACKLTTS RDEFAIWEKT LKSFELMGMD VGFLRARVCH  480
LLSMAFESEG ALDTRQYMEA ETERDRAEYE IRNLEAKLVE LKAASEKLGV DVKALKSKAE  540
SYEHKFQKEV DAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	125	KRKKKPKELNDDFFYVLVQKKMMMK
2	101	127	KRKKKPKELNDDFFYVLVQKKMMMKNK
3	314	319	KKRKRT
4	314	338	KRKKKPKELNDDFFYVLVQKKMMMK
5	315	339	KRKKKPKELNDDFFYVLVQKKMMMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-40	B3 family protein