PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028106960.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24666.2 Da    PI: 7.3246
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028106960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v+++if+s+gk++ey+s
  XP_028106960.1  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAQVSLVIFASSGKMHEYCS 59
                    79***********************************************96 PP
2K-box80.54.1e-2771169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sg++l++ak+e+l+ el+++kke++++q e+Rhl+Ged++sL +keL+ +e++Le++l ++R+k++e++ ++ ++ ++ e+e+++ n +L+
  XP_028106960.1  71 YHKQSGERLWDAKHENLSIELDRIKKENDSMQIELRHLKGEDITSLHHKELMAIEEALENGLGSVREKQMEYIDMMEKNKKMLEEENKHLNFMLH 165
                     8999******************************************************************************************* PP

           K-box  96 kkle 99 
                     ++ +
  XP_028106960.1 166 QQEM 169
                     9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AQVSLVIFAS SGKMHEYCSP  60
STTLVDILDK YHKQSGERLW DAKHENLSIE LDRIKKENDS MQIELRHLKG EDITSLHHKE  120
LMAIEEALEN GLGSVREKQM EYIDMMEKNK KMLEEENKHL NFMLHQQEMN MESSREMENG  180
YHQRVRDFQS QMPFAFRVQP IQPNLQERI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-81MIKC_MADS family protein