PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107381.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27257.9 Da PI: 7.6314

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.2	3.7e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k rqvtfskRr+g++KKA ELS+LCd+e+a+i+fs +gkly +++ XP_028107381.1 9 KRIEDKNSRQVTFSKRRTGLIKKARELSILCDVEIALIVFSARGKLYQFCT 59 79***********************************************96 PP
2	K-box	34.5	8.8e-13	82	168	10	96
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +++++l++ + + ++ Lq qRh+ +++e+L++ eL q+e+qL+ l++ R kK++l+++ + l +ke++ + + ++k XP_028107381.1 82 SVQESKKLTEGYMDFSRGTNLLQMVQRHFEEQKIEQLDVAELTQVEHQLDAILRQTRIKKSQLMMKAVTALHEKEEQPRGGRQLMEK 168 556667888888888889999******************************************************997766665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKVQLKR IEDKNSRQVT FSKRRTGLIK KARELSILCD VEIALIVFSA RGKLYQFCTG 60 DSLRKVLERY QIHKDAEVAG SSVQESKKLT EGYMDFSRGT NLLQMVQRHF EEQKIEQLDV 120 AELTQVEHQL DAILRQTRIK KSQLMMKAVT ALHEKEEQPR GGRQLMEKEI TAMINEATMD 180 DDCRRHQQQQ TQQGDPDMDL ELYGYTNNTN NNNSSTGSGG GGVYHHLQQE ESMFYLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-43	MIKC_MADS family protein