PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028107419.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 332aa    MW: 36958.4 Da    PI: 4.989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028107419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
   XP_028107419.1 14 KGPWTAEEDKKLINFILTNGQCCWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.78.2e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E+   +d+++qlG++ W++Ia++++ gRt++++k++w+++
   XP_028107419.1  71 SEYEETMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      6679999***********.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGRQPCCEKV GLKKGPWTAE EDKKLINFIL TNGQCCWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEETMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPLP TTPTHDHQFQ QQPHDQQQEQ SLPEPVPSLS EVGQNKEIET ILFESSITDT  180
EAKEEGPFNS MEVNNGFSTD EVPLIEPHEI NLVPCVPSVP LIEPHDINLV PCVPSSSSPS  240
SSSTITSSSS SSSSSSSSSS SSSSSSHFSS SNILEELELP TFEWGMGFWD DDFSNALDLL  300
ISGADNWNAT VEPLPPPTPT QYPTRMVLDQ ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-84MYB family protein