PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107624.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 455aa MW: 49148.8 Da PI: 7.7257

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.6e-11	67	92	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_028107624.1 67 PGEPDCIYYLRTGLCGYGTNCRFNHP 92 5789*********************8 PP
2	zf-CCCH	35.8	1.3e-11	111	135	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_028107624.1 111 QPDCGYYLKTGTCKYGPTCKYHHPR 135 789********************96 PP
3	zf-CCCH	39.7	8.3e-13	156	180	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG Ck+G CkF+H++ XP_028107624.1 156 ERPCPFYMRTGLCKFGVECKFHHPQ 180 79*********************97 PP
4	zf-CCCH	35.4	1.8e-11	301	326	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG CkyG+ Ck++H++ XP_028107624.1 301 DQPECRHFMSTGSCKYGSECKYNHPR 326 689*********************96 PP
5	zf-CCCH	34.9	2.5e-11	347	371	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+CkyG++CkF H+ XP_028107624.1 347 GQAVCSYYSLNGHCKYGPTCKFDHP 371 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MYLPLSVSLC ASMPDNRQVQ SNGGVSNSSN PSIDNVEETI RRLKISTNDD NQDSGAVANS 60 CPYPDRPGEP DCIYYLRTGL CGYGTNCRFN HPATSGQGVQ YRGELPERVG QPDCGYYLKT 120 GTCKYGPTCK YHHPRDRHGA GPVPLNVLGL PMRQEERPCP FYMRTGLCKF GVECKFHHPQ 180 PVTAGTMLPI PGPAAYGSSG SPIVASSGLH YVGGVSALSL PRAPYISGTH VQGPQTYMPY 240 IVSPSQGIAP THVWNTYLGC MSPGPSTSFV GSDLVYNSKN QGESGSSGLL NSIAYLPERP 300 DQPECRHFMS TGSCKYGSEC KYNHPRERIP QLATNSLGPL GLPLRPGQAV CSYYSLNGHC 360 KYGPTCKFDH PLAGFPYNYG GLSYSTVSVF DPSYYPYQRN STTVLSSEAS PSKSKAASNK 420 NQNTDTETLE NPSEKAGSPS HPLPASSEPR HNESD

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MYLPLSVSLC ASMPDNRQVQ SNGGVSNSSN PSIDNVEETI RRLKISTNDD NQDSGAVANS  60
CPYPDRPGEP DCIYYLRTGL CGYGTNCRFN HPATSGQGVQ YRGELPERVG QPDCGYYLKT  120
GTCKYGPTCK YHHPRDRHGA GPVPLNVLGL PMRQEERPCP FYMRTGLCKF GVECKFHHPQ  180
PVTAGTMLPI PGPAAYGSSG SPIVASSGLH YVGGVSALSL PRAPYISGTH VQGPQTYMPY  240
IVSPSQGIAP THVWNTYLGC MSPGPSTSFV GSDLVYNSKN QGESGSSGLL NSIAYLPERP  300
DQPECRHFMS TGSCKYGSEC KYNHPRERIP QLATNSLGPL GLPLRPGQAV CSYYSLNGHC  360
KYGPTCKFDH PLAGFPYNYG GLSYSTVSVF DPSYYPYQRN STTVLSSEAS PSKSKAASNK  420
NQNTDTETLE NPSEKAGSPS HPLPASSEPR HNESD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	1e-103	C3H family protein