PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107625.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 443aa MW: 47883.2 Da PI: 7.7462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	55	80	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_028107625.1 55 PGEPDCIYYLRTGLCGYGTNCRFNHP 80 5789*********************8 PP
2	zf-CCCH	35.9	1.3e-11	99	123	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_028107625.1 99 QPDCGYYLKTGTCKYGPTCKYHHPR 123 789********************96 PP
3	zf-CCCH	39.7	8e-13	144	168	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG Ck+G CkF+H++ XP_028107625.1 144 ERPCPFYMRTGLCKFGVECKFHHPQ 168 79*********************97 PP
4	zf-CCCH	35.4	1.8e-11	289	314	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG CkyG+ Ck++H++ XP_028107625.1 289 DQPECRHFMSTGSCKYGSECKYNHPR 314 689*********************96 PP
5	zf-CCCH	35	2.4e-11	335	359	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+CkyG++CkF H+ XP_028107625.1 335 GQAVCSYYSLNGHCKYGPTCKFDHP 359 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MPDNRQVQSN GGVSNSSNPS IDNVEETIRR LKISTNDDNQ DSGAVANSCP YPDRPGEPDC 60 IYYLRTGLCG YGTNCRFNHP ATSGQGVQYR GELPERVGQP DCGYYLKTGT CKYGPTCKYH 120 HPRDRHGAGP VPLNVLGLPM RQEERPCPFY MRTGLCKFGV ECKFHHPQPV TAGTMLPIPG 180 PAAYGSSGSP IVASSGLHYV GGVSALSLPR APYISGTHVQ GPQTYMPYIV SPSQGIAPTH 240 VWNTYLGCMS PGPSTSFVGS DLVYNSKNQG ESGSSGLLNS IAYLPERPDQ PECRHFMSTG 300 SCKYGSECKY NHPRERIPQL ATNSLGPLGL PLRPGQAVCS YYSLNGHCKY GPTCKFDHPL 360 AGFPYNYGGL SYSTVSVFDP SYYPYQRNST TVLSSEASPS KSKAASNKNQ NTDTETLENP 420 SEKAGSPSHP LPASSEPRHN ESD

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MPDNRQVQSN GGVSNSSNPS IDNVEETIRR LKISTNDDNQ DSGAVANSCP YPDRPGEPDC  60
IYYLRTGLCG YGTNCRFNHP ATSGQGVQYR GELPERVGQP DCGYYLKTGT CKYGPTCKYH  120
HPRDRHGAGP VPLNVLGLPM RQEERPCPFY MRTGLCKFGV ECKFHHPQPV TAGTMLPIPG  180
PAAYGSSGSP IVASSGLHYV GGVSALSLPR APYISGTHVQ GPQTYMPYIV SPSQGIAPTH  240
VWNTYLGCMS PGPSTSFVGS DLVYNSKNQG ESGSSGLLNS IAYLPERPDQ PECRHFMSTG  300
SCKYGSECKY NHPRERIPQL ATNSLGPLGL PLRPGQAVCS YYSLNGHCKY GPTCKFDHPL  360
AGFPYNYGGL SYSTVSVFDP SYYPYQRNST TVLSSEASPS KSKAASNKNQ NTDTETLENP  420
SEKAGSPSHP LPASSEPRHN ESD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	1e-103	C3H family protein