PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028108036.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 154aa    MW: 17584.3 Da    PI: 10.4212
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028108036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.3e-221662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     en+ n qvtfskRr g++KKA+ELSvLC+aev +i+fs   k y +
  XP_028108036.1 16 MENENNLQVTFSKRRSGLFKKASELSVLCGAEVGIIVFSLGKKAYSF 62
                    69*************************************88887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MERKSKGRQK ITMTKMENEN NLQVTFSKRR SGLFKKASEL SVLCGAEVGI IVFSLGKKAY  60
SFGHPTVDMI IDRFLSRDAP LNSGTHQLVE AHRSARVRDL NLHLTHVQAL LDVEKQRGTA  120
LDQLKMAEGQ GEHRWWEGPV EEMNLPQLHR LRLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-52M-type_MADS family protein