PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028108154.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 259aa MW: 28726.4 Da PI: 6.3028

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028108154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.6	2.1e-54	81	184	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr +ifdfl XP_028108154.1 81 QLQGFWASQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRNEIFDFL 175 799**99889******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_028108154.1 176 VDIVPREDL 184 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MDQQGHGQPP VMGVVGSSAQ MPYGVGPYQA NQMMRPSAPP PVGSTQSPQT GGTSASPAQL 60 AQHQLGYPHI HQQQQQQLQQ QLQGFWASQY QEIEQTSDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVVF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRNE IFDFLVDIVP 180 REDLKDEVLA SMPRGTLPVG GPTEGLPYYY MPPQHAPQVG APGMFMGKPV DQALYGQQSN 240 PYAAAQQMWP HQQQPPADS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	1e-86	NF-YC family protein