PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028108617.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HB-other

Protein Properties

Length: 332aa MW: 37565.5 Da PI: 4.9647

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028108617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.2	4.2e-11	260	311	3	54
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 R +++k q+e+Le++F +++ p+ +++ + + ++L+ ++V WF +Ra XP_028108617.1 260 ARKRLKKVQVETLERVFDRTKRPTNAMISSIVHVTNLPRKKVVKWFEDKRAE 311 58999*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MASASSFHSS MALQSLLAPH TERPMLPHLR PNLIMPRHPS SRPVITFSRR RNNPNTPITS 60 SKKKKQRLPQ NDAAEEDDLD ADAIELLFSQ LEEDLKNDDK SLDDDDGEIL EEDLVMLERE 120 LAEALGDDEL LGAFDSLEDD EVNKAEDNDG EEEEEEPVKL KNWQIRRLAY ALKNGRRKTS 180 IKNLAADVCL DRAVVLQLLR DPPPSLLLMS AALPDKPISV ISEPESKPLE EVSSETAADV 240 AQPEAMVNLP VHVMQKSWSA RKRLKKVQVE TLERVFDRTK RPTNAMISSI VHVTNLPRKK 300 VVKWFEDKRA EHGVPDHRLP YQRSAPETVF NS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	65	RRRNNPNTPITSSKKKK
2	260	268	ARKRLKKVQ
3	262	303	KRLKKVQVETLERVFDRTKRPTNAMISSIVHVTNLPRKKVVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	7e-60	HB-other family protein