PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028108705.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 233aa    MW: 27279.8 Da    PI: 9.62
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028108705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+
  XP_028108705.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSP 50
                    89*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAILYSP YESQPEVWPN  60
TLGVQRVLAQ FKRMPEMEQS KKMVNQEIFI RQRIVKENEH LKKQHKDNRE KEMTEVMYKC  120
LTGRGLQNLV TADLHDLGWL IDQKLEEIDK KIESIKKKPL SDLSMVPMTA RCTNEMRQDQ  180
KPNLDLAMEA MQRPQWFNEW MNHPNEHMGF GGDEMVMPFG DNHNAMWSSV FFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-57M-type_MADS family protein