PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109139.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 188aa MW: 21577.8 Da PI: 8.6242

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	8.8e-18	30	83	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_028109139.1 30 KKRRLNLEQVKTLEKNFELGNKLESERKMQLARALGLQPRQIAIWFQNRRARWK 83 4557899**********************************************9 PP
2	HD-ZIP_I/II	124.8	4e-40	29	117	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE++Fe +kLe+erK++lar+Lglqprq+a+WFqnrRAR+ktkqlEk+y++Lkr++da+k+en++L++++++L++ XP_028109139.1 29 EKKRRLNLEQVKTLEKNFELGNKLESERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKNYDVLKRQFDAIKAENDALQSQNQKLQA 117 69*************************************************************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MSFSAIEVCD HETNGVEDDL SDDGSQAGEK KRRLNLEQVK TLEKNFELGN KLESERKMQL 60 ARALGLQPRQ IAIWFQNRRA RWKTKQLEKN YDVLKRQFDA IKAENDALQS QNQKLQAGRA 120 EWIKYLGVFA NMETRANQVY DAIFPLLLSS PVLLLPYPRS QNCCSPALHS TNLLPCSSEM 180 LRILLLII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-61	HD-ZIP family protein