PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109144.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 205aa    MW: 22068.7 Da    PI: 6.338
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.31.1e-37141151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     aC aCk++rrkC+k+C++ pyf ++q  +++fa+vhk+FGasn +kll ++p ++r++a+ sl+yeA ar+rdPvyG+v+ +++lqqq+ +l+ae
  XP_028109144.1  14 ACGACKFMRRKCEKGCIFEPYFESDQagTAHFAAVHKVFGASNASKLLLKTPSHKRPEAVVSLCYEALARVRDPVYGCVSQLFSLQQQVINLQAE 108
                     7*********************9999555****************************************************************** PP

          DUF260  94 lallkee 100
                     lal++++
  XP_028109144.1 109 LALVQAQ 115
                     ***9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MRRGNNNGGG GGGACGACKF MRRKCEKGCI FEPYFESDQA GTAHFAAVHK VFGASNASKL  60
LLKTPSHKRP EAVVSLCYEA LARVRDPVYG CVSQLFSLQQ QVINLQAELA LVQAQRSTLQ  120
FLSLPPPQPQ SPSTTNAQSS SDLASTSNAS TTHFDPSTSM ELVSFCNPMD QEIDNGDDDD  180
DLQALAQEFV STYLPGVKSR PPSPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-47LBD family protein