PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109158.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24148.3 Da PI: 8.2015

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	53	105	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++++q++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_028109158.1 53 KRKLSEQQVNLLELSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 105 45899***********************************************9 PP
2	HD-ZIP_I/II	118.4	3.9e-38	52	143	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls++qv+lLE sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k k+lE +y++Lk+++d+++ e+++Le++v +L+e+l+e XP_028109158.1 52 RKRKLSEQQVNLLELSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKIKKLEDEYSKLKTEHDSVVVEKCQLETQVLTLKEQLSE 143 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MNPQVEDQMV LTSQFYPGIY NQLVPQQEEA KPRRRRRRKS KGEAGSDGGG ARKRKLSEQQ 60 VNLLELSFGN EHKLESERKD KLASELGLDP RQVAVWFQNR RARWKIKKLE DEYSKLKTEH 120 DSVVVEKCQL ETQVLTLKEQ LSEAEKETQK LLERCDGISS NSPRSSFSME AMGPPFLGAF 180 GMQGLESVFY VPENNYIHGM EWVNNLNGIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	RRRRRR
2	33	39	RRRRRRK
3	33	55	RRRRRRKSKGEAGSDGGGARKRK
4	34	56	RRRRRRKSKGEAGSDGGGARKRK
5	35	57	RRRRRRKSKGEAGSDGGGARKRK
6	36	41	RRRKSK
7	36	58	RRRRRRKSKGEAGSDGGGARKRK
8	37	59	RRRRRRKSKGEAGSDGGGARKRK
9	52	81	RKRKLSEQQVNLLELSFGNEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	8e-71	HD-ZIP family protein