PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109183.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 254aa MW: 26136.7 Da PI: 7.502

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.5	1.5e-40	39	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael XP_028109183.1 39 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 133 7*********************9989***************************************************************** PP DUF260 95 allkee 100 +l+++ XP_028109183.1 134 TYLQAH 139 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MSATANPSSS GSGGGTTSGN GGSGGNGGSG GTGGGGAGPC GACKFLRRKC VAGCIFAPYF 60 DSEQGAAHFA AVHKVFGASN VSKLLLHIPV HRRPDAVVTI CYEAQARLRD PVYGCVAHIF 120 ALQQQVVNLQ AELTYLQAHL ATLELPTPPP PPPQPLPMPP PLTILDLPSA ASMSAANDFS 180 SLFDPMAQSS WAMQHCQIDP RQFGATGALT DIPPPARGGI GSSDLQLLAR ELLHRYGSPP 240 VPCSEASPLP PHSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	3e-72	LBD family protein