PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109481.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 677aa MW: 74819.3 Da PI: 6.7463

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.5	2.9e-24	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ ++d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_028109481.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIFVKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--AD 216 89**************************986545444..9********************************************3..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_028109481.1 217 NGDLCVGIRRA 227 7888**996 PP
2	Auxin_resp	115.2	5.7e-38	288	371	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pras++eF+vk+ v++a++v++++GmRfkmafetedss++++ +Gt+++v+ dp+rWpnS+Wr+L+ XP_028109481.1 288 AATLAANGQTFEVVYYPRASAPEFCVKAVAVRAAMRVQWCAGMRFKMAFETEDSSRISWfMGTISSVQVDDPIRWPNSPWRLLQ 371 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MITVMNSVNK PMNEMEKCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHSE HAHGKADFGN 60 FPRIPSLILC RVSGIKFLAD TDTDEVYAKI RLIPLINNSC DFDDDDDDNG FMRIDTSESQ 120 EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTIFVKD VHGEVWKFRH 180 IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKNG IGGGPESRSG 240 WNTPLGVYSS FSREDENKFT RNGNGCSVNS NGNLSVKGRV RAECVAEAAT LAANGQTFEV 300 VYYPRASAPE FCVKAVAVRA AMRVQWCAGM RFKMAFETED SSRISWFMGT ISSVQVDDPI 360 RWPNSPWRLL QVSWDEPELL QNVKRVNPWL VELVSNMPAI HFSPFSPPRK KLRVPHPSDF 420 PYIGQFPMPS FSSDPLGLTS PLCCVSDHNV PAGIQGARHA HFGLSLHSSL FPHTLPQLDH 480 AAAQPPRVPT NNKSISCLLT MASSTQSSKK DNEKPTPMFL LFGQPILTEQ QISQSCSGDT 540 EKTQNFSDGS GSAVLQSGPM ENSSSDDGSP LWYKDNQKPE FGFETGHCKV YMESGDVGRT 600 LDLSALGSYE ELYMKLANMF SVVGSETLSN VNVLYRDAAG TIKHTGDEPF SEFSKTAKRL 660 TILMDSGSDN TGRYTRN

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MITVMNSVNK PMNEMEKCLD SQLWHACAGG MVQMPPVNSK VFYFPQGHSE HAHGKADFGN  60
FPRIPSLILC RVSGIKFLAD TDTDEVYAKI RLIPLINNSC DFDDDDDDNG FMRIDTSESQ  120
EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTIFVKD VHGEVWKFRH  180
IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKNG IGGGPESRSG  240
WNTPLGVYSS FSREDENKFT RNGNGCSVNS NGNLSVKGRV RAECVAEAAT LAANGQTFEV  300
VYYPRASAPE FCVKAVAVRA AMRVQWCAGM RFKMAFETED SSRISWFMGT ISSVQVDDPI  360
RWPNSPWRLL QVSWDEPELL QNVKRVNPWL VELVSNMPAI HFSPFSPPRK KLRVPHPSDF  420
PYIGQFPMPS FSSDPLGLTS PLCCVSDHNV PAGIQGARHA HFGLSLHSSL FPHTLPQLDH  480
AAAQPPRVPT NNKSISCLLT MASSTQSSKK DNEKPTPMFL LFGQPILTEQ QISQSCSGDT  540
EKTQNFSDGS GSAVLQSGPM ENSSSDDGSP LWYKDNQKPE FGFETGHCKV YMESGDVGRT  600
LDLSALGSYE ELYMKLANMF SVVGSETLSN VNVLYRDAAG TIKHTGDEPF SEFSKTAKRL  660
TILMDSGSDN TGRYTRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein