PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109940.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LSD

Protein Properties

Length: 143aa MW: 15232.7 Da PI: 8.0707

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109940.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	26	50	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_028109940.1 26 CSGCRNLLLYPVGATSVCCAVCNAV 50 ************************9 PP
2	zf-LSD1	46.8	4.7e-15	65	89	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_028109940.1 65 CGGCHTLLMYIRGATSVQCSCCHTV 89 ************************9 PP
3	zf-LSD1	41.9	1.6e-13	103	127	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_028109940.1 103 CGNCRMLLMYQYGARSVKCAVCNFV 127 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MQEIIMREVS KSSIKESYGA QSQLVCSGCR NLLLYPVGAT SVCCAVCNAV TAVPPRGTEM 60 AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL MYQYGARSVK 120 CAVCNFVTSV GASTSTTEQK FNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-71	LSD family protein