PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109956.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 229aa MW: 26232.5 Da PI: 8.229

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.7	7.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev vi++sstg+lye++s XP_028109956.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGVIVISSTGRLYEFAS 59 8***********************************************86 PP
2	K-box	79	1.2e-26	76	169	8	98
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++a+ +q+e++ L+++++ Lq+++R+l Ge+L++Ls+++L++Le qLe+slk iR+kK+++l+++i+el ++ +++n++L k++ XP_028109956.1 76 HqllSPTSEAKLWQREAESLRQQLNYLQESHRKLTGEELSDLSVEDLENLEGQLETSLKGIRTKKHQILTDEIQELNQQGVISHQANMKLYKEV 169 334456788999******************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGVIVISS TGRLYEFASP 60 SMRSIFERYN NEQENHQLLS PTSEAKLWQR EAESLRQQLN YLQESHRKLT GEELSDLSVE 120 DLENLEGQLE TSLKGIRTKK HQILTDEIQE LNQQGVISHQ ANMKLYKEVN VLRRDNAELH 180 KKAYGANDVN RSSFKPYGCS NGYDLHVPIQ LQLSQPQQTH NETPETQGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-78	MIKC_MADS family protein