PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109958.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 144aa MW: 16549.8 Da PI: 9.8203

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.9	3.1e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev vi++sstg+lye++s XP_028109958.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGVIVISSTGRLYEFAS 59 8***********************************************86 PP
2	K-box	63.5	7.7e-22	76	142	8	71
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + +++a+ +q+e++ L+++++ Lq+++R+l Ge+L++Ls+++L++Le qLe+slk iR+kK + XP_028109958.1 76 HqllSPTSEAKLWQREAESLRQQLNYLQESHRKLTGEELSDLSVEDLENLEGQLETSLKGIRTKKVQ 142 334456788999*****************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGVIVISS TGRLYEFASP 60 SMRSIFERYN NEQENHQLLS PTSEAKLWQR EAESLRQQLN YLQESHRKLT GEELSDLSVE 120 DLENLEGQLE TSLKGIRTKK VQKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	3e-58	MIKC_MADS family protein