PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110783.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 333aa MW: 37520.2 Da PI: 7.3039

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l+ ++ +G g+W+++++ +g+ R++k+c++rw +yl XP_028110783.1 13 RGLWSPEEDKKLITYISSHGHGCWSSVPKLVGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	53.5	5.7e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_028110783.1 66 RGSFTEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DKKLITYISS HGHGCWSSVP KLVGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISLGL 120 DPNTHNLLSP HQTTTNATKY SHNNQKQQNT SAFSITSHGN DASMDTKTPF ATFPSLPSSH 180 TSSTSTNPNN PISLYENSTI TTASTFEYQS PRNQIVNSLM HASLHQLVSE PCIKFARRPL 240 MERTQFLSST SNPSGFGAID ENCMWGTNSE PLGVMQPQQE KTCEGDQMDE VDINMDNSLI 300 ESSNFDFEFV ESGLLPCGMY CNVSPMDQLA WDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-82	MYB family protein