PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110901.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 334aa MW: 36171.9 Da PI: 8.4844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.8e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G ++W++I++ ++ gR++k+c++rw + XP_028110901.1 12 KGPWSPEEDDMLQKLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	53.8	4.5e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde + +a++++G++ W+tIar + gRt++ +k++w++ XP_028110901.1 66 AFTPEEDETIMRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 108 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MASTKKDVDR IKGPWSPEED DMLQKLVQKH GARNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDETIMRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKCSSMSTDE 120 GDDCSNHQPL KRSVSAGSAV PVSGLYLNPS SPSGSDVSDS SLPVMSSSHV YRPVARTGGV 180 LPPQVETTSL KNDPTTSLSL SLPGVDSSDS SNRVNEATQL RPPPPAAALV SMNIEFASPS 240 MAAAPAIVVP VQPVNQRNSE FGGVSSPAPE TAFPQFSAEL LGVMQEMIRK EVWNYMAGIE 300 QIPTQQQGGY CMPQATADGF MNAVVKRIGI SKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-85	MYB family protein