PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028111176.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 258aa    MW: 27224 Da    PI: 9.0363
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028111176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.5e-096590227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    kt+lC+ f     Ck+Gd+C+FaHg+
  XP_028111176.1 65 KTKLCNKFNTAEGCKFGDKCRFAHGE 90
                    8***********************96 PP
2zf-CCCH33.19.4e-11225249126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C  fa+ G C +G+rC+FaHg
  XP_028111176.1 225 YKTKMCESFAK-GSCTFGERCHFAHG 249
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGLPRHLCST SGCSFGDGCH FLHYVPGGFS AVAQMTNLGG NPIPPVRNGM APPPPFSDGP  60
APTAKTKLCN KFNTAEGCKF GDKCRFAHGE WELGKPNIPT YEDPRSMGSM GTRLTGRVEP  120
HQPNLAAAAN FGASATAKIS IDASLGGAII GKGGVNSKQI CRLTGVKLSI KEHDSDPNQK  180
NIELEGTFDQ IKQASAMVRD LIMNVGAVNR PTKPTHAAAP ASNNYKTKMC ESFAKGSCTF  240
GERCHFAHGA GELRKPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-57C3H family protein