PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028111408.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family NF-YC
Protein Properties Length: 206aa    MW: 23231.1 Da    PI: 5.4883
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028111408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC172.54.6e-5438139199
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rsw+haeenkrrtl+ +dia+a+trtdifdfl
  XP_028111408.1  38 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPMLFSKACELFILELTIRSWIHAEENKRRTLQNNDIATAITRTDIFDFL 132
                     89*****998899********************************************************************************** PP

           NF-YC  93 vdivprd 99 
                     vdivpr+
  XP_028111408.1 133 VDIVPRE 139
                     *****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MDNNQPPPTA AQSSSYPPQP PYHHHHLHLL LQQQQQQQLQ MFWTYQRQEI EQVNDFKNHQ  60
LPLARIKKIM KADEDVRMIS AEAPMLFSKA CELFILELTI RSWIHAEENK RRTLQNNDIA  120
TAITRTDIFD FLVDIVPREI KEEGVEIVGS TATGVPYYHP PAAGGVDPGV HVPPSQAWQS  180
VWQTAVEDWS YGGGGSGGQV NLDGQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.13e-81NF-YC family protein