PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028111637.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 371aa MW: 40568.1 Da PI: 6.6757

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028111637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_028111637.1 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia ++ +Rt++++k++w+++l XP_028111637.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLA-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRTPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLAKRT DNEIKNYWNT HLKKKLAKMG 120 IDPLTHKPKN EALLSSHGPS KNAANLSHMA QWESARLEAE ARLVRQSKLR SNSLKLQPQL 180 GSTQPEFTSA SISMNKNVAA QRCLDILNAW NGGGEDLESP KSTMSFLKNA PPIATTGVGE 240 SSAPAEFIEF VGNSGSQFMN EGEEDWKGLG NSMSYTSGIH DVAVEGSAWS PESLRTSGNE 300 SVNGIENFVE TFTDLLLSNS GDRSFSEGGG ESDSGGGGEN CSGGSGSDYY EDNKNYWNSI 360 LDLVNSSPSH F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRTPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLAKRT DNEIKNYWNT HLKKKLAKMG  120
IDPLTHKPKN EALLSSHGPS KNAANLSHMA QWESARLEAE ARLVRQSKLR SNSLKLQPQL  180
GSTQPEFTSA SISMNKNVAA QRCLDILNAW NGGGEDLESP KSTMSFLKNA PPIATTGVGE  240
SSAPAEFIEF VGNSGSQFMN EGEEDWKGLG NSMSYTSGIH DVAVEGSAWS PESLRTSGNE  300
SVNGIENFVE TFTDLLLSNS GDRSFSEGGG ESDSGGGGEN CSGGSGSDYY EDNKNYWNSI  360
LDLVNSSPSH F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-121	MYB family protein