PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028113242.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26367.2 Da    PI: 8.6864
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028113242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.85.8e-233377246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    r +n+snr vtfskRr g++KKA+EL++LC+ae+a+i+fs+  k 
  XP_028113242.1 33 RMSNESNRMVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKA 77
                    789*************************************97765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MLTWDGTKDQ VCEDTNPAME RKGKGRQKIA MTRMSNESNR MVTFSKRRSG LFKKASELCT  60
LCGAEIAIIV FSPGKKAFSF GHPCVDTVVD CFLSRNSLPN SGSLQLVKAH CNANVSKLNL  120
QLTEALDMLE AEKKRGEELD KMRKASQDRC WWEAPVSELG LQQLEQLKVA MEDLKKNVAK  180
QSEKIQMEES NPSRFFEAGS SSMGWRVGGA SDGVKVSGLR LSMTPHGYTL DYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-61M-type_MADS family protein